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From the Department of Clinical Chemistry
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Isala Klinieken, Weezenlanden, Zwolle, The Netherlands; the Department of Medical Genetics,
University of Antwerp, Antwerp, Belgium; the Department of Otorhinolaryngology,
UMC St. Radboud, Nijmegen, The Netherlands; the Department of Molecular Cell Biology,
Leiden University Medical Centre, Leiden, The Netherlands; the Department of Internal Diseases,
¶
Amphia Hospital, Breda; The Netherlands; the Department of Internal Diseases,
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Spaarne Hospital, Haarlem, The Netherlands; and the Department of Medical Genetics,
**
University Medical Center Utrecht, Utrecht, The Netherlands
| Abstract |
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| Introduction |
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The clinical phenotype of WS shows resemblance with mitochondrial disorders, such as maternally inherited diabetes and deafness, mitochondrial encephalopathy, mitochondrial myopathy, lactic acidosis and stroke-like episodes, or Lebers hereditary optic neuropathy and much research has focused on mitochondrial pathology in WS. Mitochondrial disturbances at the biochemical, morphological, and molecular level have been described in WS patients, but this has not been a consistent finding.6, 7, 8, 9, 10
Genetic linkage studies linked WS to the short arm of chromosome 411 and in 1998 the gene for WS, wolframin/WFS1 was identified.12, 13 The WFS1 gene spans 33.4-kb of genomic DNA and is comprised of eight exons, of which the first exon is noncoding. The 3.6-kb WFS1 mRNA encodes a polypeptide of 890 amino acids predicted to have nine putative transmembrane domains, and an apparent molecular mass of 100-kd. The protein shows predominant subcellular localization to endoplasmic reticulum,14 but no physiological function has been ascribed to the protein as yet. Since the identification of the WFS1 gene, more than 50 distinct mutations have been found in affected individuals of Wolfram families worldwide.12, 13, 15, 16, 17, 18 These vary from nonsense, missense, to frameshift insertion/deletion lesions.
Here we have characterized the coding region of WFS1 in 12 WS patients from nine Dutch families. Also, mtDNA was examined for the presence of gross alterations and for the A3243G mutation in the leucyl tRNA gene, as has been described previously in patients with familial diabetes and deafness.19
| Materials and Methods |
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WSF1 Analysis
Exons 2 to 8 (exon 1 is noncoding) of the WFS1 gene were amplified by polymerase chain reaction (PCR) using sets of primers as previously published by Strom and colleagues,13
with the exception of exon 4 in which primers as described by Inoue and colleagues12
were used.
In WF1, WF2, WF3, WF6, and WF9, mutation screening was performed by the single-strand conformation polymorphism (SSCP) technique. An equal volume of formamide-containing buffer was added to an aliquot of the amplified PCR product and the sample was denatured at 95°C for 5 minutes, quick-cooled, and electrophoresed on glycerol-free 6% polyacrylamide gels at 20°C for 2.5 hours at 30 W (DCode Universal Mutation Detection System; Biorad, Veenendaal, The Netherlands). Bands were visualized by silver staining (Amersham Pharmacia Biotech, Amersham Biosciences Europe Gmdh, Roosen daal, The Netherlands). DNA samples of Wolfram patients with well-characterized mutations in the WFS1 gene13 and samples known to carry no WFS1 mutation were included in the SSCP analysis as positive and negative controls, respectively. Abnormal migrating bands were reamplified, purified either from solution or from agarose gel by GFX columns (Amersham Pharmacia Biotech), and directly sequenced with both forward and reverse primers using the Thermo Sequenase Cy5.5 dye terminator cycle-sequencing kit (Amersham Pharmacia Biotech). Sequencing products were run on a SEQ4x4 personal DNA sequencer (Amersham Pharmacia Biotech). In the case of WF9, the negative result from SSCP analysis prompted us to sequence the entire WFS1-coding sequence.
In WF4, WF5, WF7, and WF8, the entire coding sequence of the WFS1 gene was sequenced, without previous SSCP analysis, using primers previously described13 with an ABI3100 automated DNA sequencer (Applied Biosystems, Foster City, CA, USA). DNAs from Dutch controls were screened for the D211N and P607R mutations (WF5) using the Snapshot kit on an automated sequencer ABI3100.
MtDNA Analysis
The presence of major rearrangements in mtDNA was determined by restriction fragment length polymorphism analysis. Five µg of total DNA was digested with PvuII (or BamHI) overnight at 37°C, and fragments were resolved on a 0.8% agarose gel, followed by Southern blotting. The blot was hybridized with a 32P-labeled HeLa cell mtDNA probe. Hybridization signals were quantified with a PhosphoImager and visualized by autoradiography. A positive mtDNA deletion sample obtained from a patient with Pearson syndrome20
was included in the procedure, as well as a negative control.
The presence of the A3243G mutation in the mitochondrial tRNALeu(UUR) gene was determined by ApaI digestion of a 427-bp PCR-amplified fragment encompassing the mutated site (forward primer, 3029 to 3048 (5'-AAGGTTCGTTTGTTCAACGA-3'); reverse primer, 3437 to 3456 (5'-AGCGAAGGGTTGTAGTAGCC-3')). DNA fragments were separated on polyacrylamide gel and visualized by silver staining (Pharmacia Biotech). Heteroplasmy levels as low as 1% could easily be detected. Positive and negative controls for the A3243G mutation19 were included in the procedure.
RNA Analysis
Skin fibroblasts were grown in Dulbeccos modified Eagles medium containing 4.5 mg/ml of glucose and 110 µg/ml of pyruvate supplemented with 10% fetal calf serum. RNA was isolated from cultured cells [WF2 (II-2) and WF9 (II-1)] or from freshly obtained blood samples [WF2 (I-1, II-2 and II-3), WF6 (II-1) and 15 controls], using a QIAamp RNA Blood Mini Kit (Qiagen, Westburg B.V., Leusden, The Netherlands). A one-step reverse transcriptase-PCR was performed using the Titan One Tube RT-PCR System (Roche Diagnostics, Nederland B.V., Almere, The Netherlands) using an exon 1 forward primer, 5'-GCAGATCTCCCGTTTGCG-3', and an exon 8 reverse primer (R8-7 from Strom and colleagues13
). The amplicons of 3 kb in length were purified from agarose gel by GFX column (Amersham Pharmacia Biotech) and sequenced using the Thermo Sequenase Cy5.5 dye terminator cycle sequencing kit (Amersham Pharmacia Biotech) using various primer sets; in particular, the exon 2 acceptor splice-site region was analyzed using an exon 1 forward primer (see above) and an exon 2 reverse primer (5'-TCTGCTCTTTCCCGGCTC-3'). Fragments were run on a SEQ4x4 personal DNA sequencer (Amersham Pharmacia Biotech). The same primer set was used to test for the presence and the amount of splice-variant WFS1 mRNA templates in 17 RNA samples by restriction fragment length polymorphism analysis. A PCR-amplified product of 333 bp was digested with both HaeII and Hinf I, resulting in the formation of four smaller fragments (146, 81, 73, and 33 bp, respectively) and run on a 12% polyacrylamide gel. In case of variant exon 2 splicing (giving rise to a 4-bp deletion), the smallest 33-bp fragment became 29 bp in length. Bands were visualized by silver staining.
| Results |
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In WF2, a heterozygous C insertion at nucleotide position (np) 1581 was found in the patient, as well as in her father and her younger sister. This mutation leads to a frameshift at amino acid residue 527 resulting in a 14-amino acid extension before a stop codon is encountered. As a result, 39% of the wolframin protein becomes lacking. At the genomic level, no second mutation could be detected in the WFS1-coding region in this patient.
In WF3, a homozygous 15-bp deletion (1515-1530del15nt) in exon 8 was present in both affected siblings. The parents are cousins and are heterozygous for this deletion. According to the predicted structure of the wolframin protein, residues 508 to 512 are located in the fifth transmembrane domain.
In WF4, a heterozygous 4-bp deletion (L410del4nt) in exon 8 was detected in both the patient II-1 and her mother. This deletion leads to a frameshift at amino acid residue 410 resulting in a 30-amino acid extension of mainly serines and prolines before a stop codon is encountered. As a result, half of the wolframin becomes missing. From her father, she has inherited an allele harboring the identical 15-bp deletion (1515-1530del15nt) in exon 8 that is also present in both affected siblings from WF3.
In WF5, both affected siblings are compound heterozygous for two missense mutations; 631G->A (D211N) and 1820C->G (P607R). Two of their sisters were homozygous wild type, whereas one of their brothers is heterozygous for P607R. The missense mutations D211N and P607R were not present in 92 and 88 control samples, respectively.
In WF6, a homozygous 13-bp deletion was identified, which leads to a frameshift at amino acid residue 509 resulting in a 7-amino acid extension before a stop codon is encountered. As a result, 42% of the wolframin protein becomes lacking, including half of the predicted transmembrane region and the complete C-terminal part of the protein.
Sequence analysis also revealed a number of polymorphic variants in the coding sequence (R228R, I333V, V395V, N500N, H611R, K811K, S855) as well as intronic variants (IVS416 A->G, IVS49 A->G, IVS6 + 73 G->A).15, 17, 21
Variant Splice-Site in WFS1
During mutation analysis on cDNA of WF9 (II-1) we came across a mixed sequencing pattern just before the ATG translation start region that could be explained by the coexistence of a wild-type sequence with a sequence displaying a 4-bp deletion (GCAG) just before the ATG located in exon 2 (Figure 2A)
. The 4-bp deletion was not detected at the genomic level using exon 2 primers,13
suggesting that the deletion has arisen at the transcriptional level. Inspection of the exon 2 acceptor splice region revealed the presence of a second CAG motif adjacent to the first acceptor splice motif (Figure 2 B and C)
, which might be used as an alternative splice site. We tested the incidence of alternative splicing in 17 control RNA samples by restriction fragment length polymorphism analysis (see Materials and Methods). Mixed populations were observed present in 11 of 17 control RNA samples, with ratios varying from 3 to 60% (result not shown).
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| Discussion |
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An evaluation of the location of WFS1 mutations in 33 families with WS showed that the majority of frameshifts and nonsense mutations resided in the predicted transmembrane domains of wolframin.15 In our study, we observed a similar clustering of mutations within the transmembrane domains (four of seven). Three of these mutations cause a premature translation stop because of frame-shift resulting in a complete absence of the carboxy tail of the wolframin protein. No function has been ascribed to wolframin as yet, but a role in membrane trafficking, protein processing, or calcium homeostasis in the endoplasmic reticulum has been postulated. It is speculated that the carboxy tail is interacting with other, yet unknown proteins. Expression studies of mutant proteins are awaited to determine which parts of the protein are essential for biological function.
In three Dutch Wolfram kindreds no WFS1 mutations were detected at the genomic DNA level. In these cases, we have not examined the promoter or intronic sequences for mutations, therefore this possibility cannot be ruled out. In WF2, only one affected allele could be identified, the other allele might harbor a mutation in the regulatory sequences WFS1 affecting proper transcription. Genetic heterogeneity of WS has recently been demonstrated by the identification of an additional locus (WFS2) on chromosome 4q.22 Supporting a possible WFS2 linkage in WF7 and WF8 is the fact that in WFS2-linked patients as well as in our two affected individuals lacking WFS1 mutations diabetes insipidus is absent. However, WFS2 linkage was not addressed here. An alternative explanation could be that WF6, WF7, as well as WF8 clinically resemble WS of unknown etiological cause. A number of other disorders feature the presence of diabetes mellitus and one or more of the conditions commonly found in WS such as optic atrophy, sensorineural hearing loss.23 One of these disorders is the maternally inherited diabetes mellitus and deafness that is associated with the A3243G mutation in the mitochondrial tRNALeu(UUR) gene.19 However, no A3243G mutation was detected in WF7, WF8, and WF9. Furthermore, in agreement with other findings10, 15 we were unable to detect large-scale deletions in mtDNA in Wolfram kindreds WF2, WF3, and WF9. Several other reports, however, have shown that in patients with WS, of which some of them showed linkage to chromosome 4p16, single9, 24 or multiple deletions25 in mtDNA were present. Recently, mutations in WFS1 were discovered co-existing with mtDNA deletions in Wolfram kindreds.16 It is hard to believe that the co-existence of WFS1 mutations and mtDNA deletions in several patients has occurred accidentally. Therefore, a role for WFS1/wolframin in mitochondrial function is suggested.
Effect of WFS1 Splice-Variant on Translation Efficiency
We have observed the phenomenon of alternative splicing at the acceptor site of exon 2 resulting in a 4-bp deletion in the 5'UTR of WFS1 (Figure 2)
. Alternative splicing was identified by restriction fragment length polymorphism analysis in 11 of 17 (65%) control RNA samples, although with various intensities. This 4-bp deletion modifies the translation initiation consensus sequence consisting of GCC(A/G)CCAUGG) by creating a C at position -3 with respect to the AUG of the WFS1 gene (Figure 2D)
. The purine (A or G) 3 bases before the AUG codon and the G immediately following it appear to be the most important that influence efficiency of translation.26
To our knowledge, there are only two documented cases in which a similar purine to pyrimidine switch has occurred at position -3 with respect to the AUG translation start site; one involves a globin mRNA in a patient with
-thalassemia27
and the other involves a BRCA1 mRNA in sporadic breast cancer.28
In both cases, in vitro and in vivo expression studies have shown a marked reduction in translation efficiency up to 70%.27, 28
At present, it is not known whether translation of the variant WFS1 transcripts will be affected, and if so, by which mechanism. The 4-bp deletion in the AUG consensus sequence of WFS1 may promote context-dependent leaky scanning of ribosomes leading to a strong reduction in translation efficiency as predicted by Iida and Masuda.29
Otherwise, initiation from a downstream AUG codon may occur leading to the formation of truncated protein if the start codon is not in frame with the normal translation initiation site. To definitively establish the impact of the 4-bp deletion on WFS1 function, expression studies need to be performed.
Diagnostic Criteria for WS
WFS1 mutations were identified in all Wolfram kindreds (WF1 to WF6) that met the minimum ascertainment criteria for the diagnosis of WS, being the occurrence together of early-onset (<30 years) diabetes mellitus and optic atrophy.5
Khanim and colleagues17
has recently described their refined diagnostic criteria by adding the requisite that patients have both diabetes mellitus and optic atrophy occurring before 15 years of age. Using these refined criteria, WF5, in which we have identified compound heterozygous WFS1 missense mutations, would have been excluded from further analysis because in both patients optic atrophy occurred at relatively high age (26 and 28 years, respectively). In the families harboring mutations in WFS1 (WF1 to WF6), diabetes mellitus presented at a median age of 4 years (range, 1 to 12 years) and optic atrophy appeared at a median age of 12 (range, 5 to 28 years). Diabetes insipidus appeared in six of nine (67%) patients.
Genotype and Phenotype Correlations
We have noticed a relatively mild phenotype in affected individuals of WF5 by the relatively late onset of optic atrophy and the absence of renal tract or neurological abnormalities. Both patients were compound heterozygous for two missense mutations. Two cases have been described in the literature in which missense mutations were associated with a mild clinical presentation. In one report an individual homozygous for a missense mutation in WFS1 (A716T) was described displaying features of WS, specifically juvenile diabetes mellitus and cataracts, but lacking optic atrophy that is part of the definition of WS.30
In the other report a patient, homozygous for a missense mutation (P885L), had a mild phenotype and has not developed diabetes insipidus, renal involvement, or neurological abnormalities.15
These observations suggest that a correlation between the type of mutation and disease severity exists. Patients with missense mutations seem to have an attenuated disease phenotype whereas patients with protein-truncating mutations suffer from the complete, severe WS. Further support for potential genotype-phenotype relationships in WFS1 comes from the description of two nonrelated patients who were both homozygous for a 4-bp deletion (del883fs/ter949).15, 31
This deletion results in a frameshift and readthrough, predicting an elongated protein of 949 amino acids. Both patients display a strikingly similar, severe phenotype of brain-stem atrophy and central respiratory failure with diabetes mellitus and optic atrophy but without diabetes insipidus and deafness. No central respiratory failure was observed in patients compound heterozygous for this 4-bp deletion.15
This suggests that the extended carboxy tail may affect proper interaction with other, as yet unidentified, proteins.
Recently, it was shown that dominantly inherited nonsyndromic low-frequency sensorineural hearing loss is caused by heterozygous missense mutations in WFS1.21, 30 Hearing loss can be progressive and mainly affects 250 to 2000 Hz, without associated features segregating with it.32 In seven families with low-frequency sensorineural hearing loss six different missense mutations were identified, all located in the carboxy-terminal part of the wolframin protein. A relative, homozygous for a mutation, which in heterozygous form is associated with low-frequency sensorineural hearing loss, displayed features of WS.30 Heterozygous carriers of WS have an increased incidence of psychiatric illness, including depression, suicide attempts, and anxiety with or without panic disorder.33 Several missense mutations in WFS1 have been identified in patients with isolated psychiatric disorders that are absent in normal controls.34 It has also been suggested that heterozygous carriers in a WS family have an increased risk of hearing loss as well as of diabetes mellitus.35 As far as currently known, in WF6, the mother of the patient experiences recurrent depression with suicide attempts and in WF8, the mother of the patient has psychiatric illness, although here no WFS1 mutation has been detected.
In conclusion, we have confirmed the homogeneity of WS by identifying WFS1 mutations in Dutch patients with WS. Our findings expand the spectrum of mutations in WFS1 and represent the first molecular characterization of Dutch patients with WS. Molecular analysis of WFS1 allows refinement of clinical diagnostic criteria for WS, which helps to dissect the clinically overlapping syndromes sharing diabetes mellitus and optic atrophy.
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| Acknowledgments |
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| Footnotes |
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K. C. holds a predoctoral position with the Instituut voor de Aanmoediging van Innovatie door Wetenschap en Technologie in Vlaanderen (IWT); and G. V. C. holds a research position with the Flemish fonds voor Wetenschappelijk Onderzoek (FWO).
Accepted for publication December 26, 2002.
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