JMD 2001, Vol. 3, No. 4
Copyright © 2001 American Society for Investigative Pathology & Association for Molecular Pathology
Genetic Heterogeneity in Saliva from Patients with Oral Squamous Carcinomas
Implications in Molecular Diagnosis and Screening
Adel K. El-Naggar*,
Li Mao
,
Gregg Staerkel*,
Madelene M. Coombes*,
Susan L. Tucker
,
Mario A. Luna*,
Gary L. Clayman
,
Scott Lippman¶ and
Helmuth Goepfert
From the Departments of Pathology,
*
Medical Oncology,
Biomathematics,
and Head and Neck Surgery,
and the Cancer Prevention Center,
¶
The University of Texas M. D. Anderson Cancer Center, Houston, Texas
 |
Abstract
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We performed microsatellite analysis at chromosomal regions
frequently altered in head and neck squamous carcinoma on matched
saliva and tumor samples from 37 patients who had oral squamous
carcinoma. The results were correlated with the cytologic findings and
traditional clinicopathologic factors to assess the diagnostic and
biological potential of these markers. Our data showed that 18 (49%)
of the saliva samples and 32 (86%) of the tumors had loss of
heterozygosity (LOH) in at least one of the 25 markers studied. In
saliva, the combination of markers D3S1234,
D9S156, and D17S799 identified 13 (72.2%) of the 18 patients
with LOH in saliva (P < 0.001). For
tumors, markers D3S1234, D8S254, and D9S171
together identified 27 (84.3%) of the 32 tumors with LOH at any of the
loci tested (P < 0.001). Eleven (55%) of the 20
saliva samples with cytologic atypia and seven (35%) of the 17
specimens without atypia had LOH. Significant correlation between LOH
in tumor at certain markers and smoking and alcohol use was found. Our
results indicate that: 1) epithelial cells in saliva from patients with
head and neck squamous tumorigenesis provide suitable material for
genetic analysis; 2) combined application of certain markers improves
the detection of genetic alteration in these patients; 3) clonal
heterogeneity between saliva and matching tumor supports genetic
instability of the mucosal field in some of these patients; and 4) LOH
at certain chromosomal loci appears to be associated with smoking and
alcohol consumption.
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Introduction
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The oral cavity is an ideal site for screening individuals at high
risk of developing head and neck squamous carcinoma (HNSC) because of
the availability of cells shed in saliva and the convenience of
visualizing and sampling lesions at these locations.1, 2, 3
However, little progress has been made in the management of patients
with oral squamous carcinoma due mainly to the nonspecific symptoms,
minimal physical finding inpatients with early-stage cancer, and the
lack of biological predictors of progression.4
Identifying
novel and reliable biogenetic markers for the biological assessment of
squamous lesions may assist in early diagnosis and treatment of head
and neck squamous tumorigenesis. Microsatellite DNA motifs consisting
of highly polymorphic short tandem repeat sequences distributed
throughout the genome have been widely and successfully used as markers
for molecular analysis of tumorigenesis in head and neck and other
neoplasms.1, 5, 6, 7
Studies using microsatellite markers from different chromosomal arms in
HNSC have shown that alterations at certain regions on chromosomes 3p,
9p, 17p and 18q to be associated with the development of these
tumors.1, 2, 6, 8, 9, 10, 11, 12
Although the timing and the order of
these alterations are currently unknown, different studies have shown
high incidence of loss of heterozygosity (LOH) in noninvasive lesions
indicating an early association with tumorigenesis.1, 6, 7
Analysis of selected microsatellite markers at these regions on
epithelial cells from patients saliva is a convenient and
non-invasive approach for molecular screening and early detection of
this disease.13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24
In this study, we evaluated the
diagnostic and biological implications of the alterations at several of
the above mentioned microsatellite markers in prospectively collected
saliva and tumor specimens from patients who had oral squamous cell
carcinoma.
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Materials and Methods
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Forty matched histologically normal squamous mucosa and tumor
tissues and saliva collected freshly from patients with primary
untreated HNSC were prospectively acquired between 1996 and 1998 by the
Department of Pathology at The University of Texas M. D. Anderson
Cancer Center after obtaining patient consent. Ten saliva samples from
normal individuals with negative history of cancer were also collected
and used as a biological control. Histologically normal squamous mucosa
from each cancer specimen was stripped from the farthest margin after
frozen section evaluation and used as putative controls. Ficoll-Hypaque
isolated lymphocytes from heparinized peripheral blood from all
patients and 10 normal volunteer individuals were also obtained and
immediately frozen; lymphocytes were used as control for saliva
analysis from normal volunteers. Lymphocytes were used only if
histologically matched mucosa was suspected to harbor alterations.
For all patients, tobacco and alcohol consumption histories were
obtained from the epidemiology database. Patients demographic,
pathological, and clinical information was collected retrospectively
from pathology reports and patient records. The 10 normal saliva
samples from healthy individuals were obtained from five nonsmokers and
five current smokers.
Saliva Collection
After the mouth of each patient and normal subject was washed with
sterile water, saliva specimens were collected in a sterile cap and
transported immediately to the laboratory to be centrifuged at
1200 g for 5 minutes. The supernatants were decanted and the cell
pellets were frozen at -80° in the same tubes. Three cases were
eliminated for lack of sufficient DNA from saliva samples and the
remaining 37 cases formed the cohort of materials for the analysis.
DNA Extraction
Extraction of DNA was performed using DNAzol (Molecular Research
Center, Cincinnati, OH). Cells were lysed in DNAzol using a Tissue
Tearor (Biospec Products, Bartlesville, OK) for fresh tissue, and a
vortex homogenizer for saliva. The liberated DNA was precipitated with
ethanol and resuspended in 10 mmol/L Tris, 1 mmol/L EDTA.
Microsatellite Analysis
Aliquots of DNA were subjected to standard polymerase chain
reaction (PCR) analysis using primers for the following loci: D3S656,
D3S1293, D3S1234, D3S1217, D3S1261, D8S254, D8S261, LPL-tet, D8S298,
D8S283, D9S104, D9S156, D9S168, D9S171, D9S199, D17S513, TP53, D17S799,
CHRNB1, D17S122, D18S46, D18S363, D18S35, D18S39, and D18S41 (Research
Genetics, Huntsville, AL). The loci were chosen based on the frequency
of their alteration in head and neck tumors. Microsatellite location on
the chromosomal arms was determined based on the latest map in the
Genetic Location Database of the University of Southampton, U. K.
One primer was end-labeled using
32P-ATP and
T4 polynucleotide kinase. PCR was performed in a 20 µl volume with 10
ng of genomic DNA, 10 mmol/L Tris-HCL (pH 8.3), 50 mmol/L KCl, 2.5
mmol/L MgCl2, 0.001% gelatin, 0.5 µmol/L of
each unlabeled primer, 0.01 µmol/L labeled primer, 0.2 mmol/L dNTPs,
5% dimethyl sulfoxide (Sigma Chemical, St. Louis, MO), and 0.5 units
of Amplitaq Gold DNA polymerase (Perkin-Elmer, Norwalk, CT).
The amplification process consisted of: (a) an initial 10-minute
denaturation step at 94°; (b) 35 cycles of denaturation at 94° for
30 seconds, annealing at 5560° for 1 minute, and elongation at
72° for 1 minute; and (c) a final elongation at 72° for 5 minutes.
Sequencing stop buffer was added to the reactions. PCR products were
then denatured at 94° for 5 minutes and quickly chilled, and 46
µl was loaded on 7% acrylamide-urea sequencing gels containing 32%
formamide. Electrophoresis was performed at 80 W for 24 hours,
depending on the fragment size. The gels were dried and exposed to
Hyperfilm-MP (Amersham, Arlington Heights, IL).
Evaluations were conducted by two independent observers who visually
scored the pattern and the band intensity between normal tissue, tumor,
and saliva specimens from each case before the identification of the
patients. LOH was defined by the presence of an allelic band difference
between nonmalignant epithelium and tumor or saliva of more than 50%.
Visually suspicious cases were subjected to densitometry, and a
difference of >30% was scored as LOH. Instability was defined as the
appearance of a novel band that was not seen in the normal control.
Acridine Orange Flow Cytometry
Disaggregated cells were adjusted to 1.0 x
106 cells/ml. A cytospin preparation was
evaluated for quality and cellular integrity. Cells were subsequently
stained with acridine orange according to the two-step procedure of
Traganos et al.25
Ploidy status was defined by the DNA
index, which represents the ratio of the relative
G0/G1 stemline portion of
the tumor samples to that of the normal peripheral blood lymphocytes.
Diploid DNA is defined by a single G0/GI peak
with a DNA index of 1.0, and DNA aneuploidy is defined by the presence
of one or more additional stemlines to the right (hyperdiploid, DI >
1.0) or the left (hypodiploid, <1.0) of the
G0/G1 diploid peak. A near
diploid (hypodiploid or hyperdiploid) DI was determined after mixing
the test sample with lymphocyte controls. The coefficient of variation
(CV) of DNA diploid and aneuploid stemline ranged from 2.1 to 5.4 with
a mean of 3.6 ± 1.2 and 2.8 to 6.1 with a mean of 4.9 ±
1.6, respectively.
Statistical Methods
All correlations were performed using a two-tailed Fishers exact
test.
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Results
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Table
1 presents the clinicopathologic and epidemiological characteristics of
the 37 study subjects. None of the histologically normal squamous
mucosas used as a control showed any alterations at the microsatellite
sites tested. Accordingly, no further analysis of the lymphocytes from
these patients were performed. The incidence of LOH at individual
markers and its occurrence per chromosomal arm for both tumor and
corresponding saliva samples are presented in Table
2 and Figure 1
. Chromosomes 9p, 3p, and 17p showed the highest incidence of LOH in
both tumor and saliva. We also investigated the use of small
combinations of markers to improve the detection of genetic alterations
in both saliva and tumor samples as a likely approach for future
clinical applications. Figure
2 illustrates LOH found in tumor and saliva (A), tumor alone (B), and
saliva alone (C).
Saliva
Of all 37 saliva specimens, 18 samples (49%) manifested LOH, and
19 samples (51%) lacked any abnormalities. The most frequent LOH
(21.6%) was found at marker D3S1234 (8 cases), but adding markers
D17S799, and D9S156 (13 35%) of the 37 cases analyzed showed LOH which
led to 100% specificity and 44% sensitivity of LOH detection. Eleven
instances of instability were identified in saliva from three cases.
None of the 10 informative saliva samples from healthy individuals
showed any LOH at the markers used.
Tumor
Thirty-two (86%) tumors showed LOH in at least one marker, and
five (14%) had no LOH. The two markers that exhibited LOH most
frequently in tumor tissue were D9S171 and D9S156, which identified 17
(53%) incidences of LOH each. The combination of markers D9S171 +
D3S1234 identified 24 (75%) of the 32 tumors with LOH
(P = 0.051). Addition of marker D8S254 to the
above combination identified three more instances of LOH for a total of
27 cases (P = 0.009). This marker combination
gave 84% sensitivity and 100% specificity of LOH detection. Various
other combinations of markers, especially those of D9S171, D3S1234,
D8S254, and D9S156, identified similar incidence of tumors with LOH.
Four incidences of instability were also noted in tumors from four
different patients.
Saliva versus Tumor
Sixteen tumors from the 18 patients with LOH in saliva samples (in
one or more of the 25 markers) had LOH in corresponding tumors. Also,
16 tumors from the 19 patients with no LOH in saliva samples had LOH
(P = 1.00, Fishers exact test); the occurrence
of LOH in saliva did not predict the LOH in corresponding tumor
samples. One pair of markers (D3S1234 + D9S199) showed a statistically
significant correlation in LOH between saliva and tumor
(P = 0.038), as did many sets of three markers.
The majority of these sets of three markers showed high agreement
between saliva and tumor (LOH in both saliva and tumor or lack of LOH
in both saliva and tumor). However, there was no significant
correlation between LOH in saliva and in tumor for individual markers.
In three instances, reciprocal LOH was noted between saliva and
matching tumor specimens (Figure 2A)
. In these instances, the finding
was considered discordant. No concomitant instability was found in any
saliva and tumor samples manifesting this feature.

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Figure 2. Representative illustrations of LOH in specimens. A: LOH in
both tumor and saliva; B: LOH in tumor alone; C:
LOH in saliva alone. N, normal; T, tumor; S, saliva.
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Cytologic Atypia and LOH in Saliva
No malignant cells were identified in any of the saliva samples by
cytologic examination of giemsa-stained slide preparation. Twenty
(54%) of the 37 saliva specimens had cytologic atypia. Nine (45%) of
the 20 cases with cytologic atypia had no alterations, and 11 of the
remaining (55%) had LOH; 7 (41%) of the 17 samples with cytologically
normal epithelial cells had LOH in at least one marker
(P = 0.79). Although no correlation between LOH
at single marker and atypia was found, two markers showed the highest
association with cytological atypia (D9S156 and D9S168,
P = 0.132 and P = 0.217, respectively).
Combining either of these markers with D3S1261 showed statistical
correlation between LOH and atypia (P = 0.02)
with 60% and 100% specificity (P = 0.020). The
inclusion of a third marker did not improve the correlation.
LOH and Clinicopathological Factors
A correlation between certain marker combinations and smoking
history at four markers alone or in various combinations (D3S1293,
CHRNB1, D8S298, and D9S104) showed correlation with this feature. This
and other quadruple combinations of markers identified LOH in 15 of the
18 smokers (P = 0.0001). Interestingly, patients
who quit smoking showed an LOH frequency that was between that of
smokers and nonsmokers: five of the 10 patients who quit smoking had
LOH in at least one of these markers in their tumors. Multiple markers
in tumors correlated with stage (e.g., D3S1261, D8S283, D9S156, D9S168,
and TP53); the combination with the highest correlation was D3S1261,
D9S156, and TP53 (P = 0.002). Similarly, the
combination D18S363 and D8S283 was significantly correlated with the
DNA index (P = 0.002). The only factor
significantly correlated with LOH at marker D3S1248 in saliva was the
DNA index (P = 0.014).
Saliva from Smoking and Nonsmoking Normal Volunteers
All of the 10 normal saliva samples were informative for at least
one of the markers used. None of the DNA extracted from the 10 saliva
specimens from normal nonsmoking and smoking individuals manifested any
LOH at the markers analyzed. Only one saliva specimen from a normal
smoker showed instability at one marker on the short arm of chromosome
3.
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Discussion
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Molecular genetic studies of HNSC have demonstrated frequent
genetic alterations at certain chromosomal regions in premalignant
lesions and invasive tumors.1, 2, 3, 4, 5, 6, 7, 8, 9
The studies also showed
that certain regions on chromosomes 3p, 9p, 8p, and 17p are frequently
altered in dysplastic lesions1, 6, 7, 8
and may constitute an
early event in lesion development. Analysis of these markers in oral
secretions and other accessible specimens may allow for rapid,
inexpensive, and objective assessment of the genetic abnormalities at
these sites for early detection, screening of individuals at high risk,
and follow-up of patients with cancer.2, 3, 26
In this study, approximately 50% of the saliva samples and 86% of the
tumor specimens manifested microsatellite LOH. The incidence of LOH in
saliva, however, could have been higher had a method to enrich the
epithelial cells in specimens been used.27
The results,
however, support those of previous studies and further underscore the
early association of these markers with HNSC
tumorigenesis.1, 2, 6, 7
The genetic heterogeneity between
saliva negative for malignant cells and corresponding tumor specimens
in certain cases, highlight the presence of genetic alterations in the
squamous epithelial cells lining the oral cavity exclusive of the
cancer site.28, 29, 30, 31, 32, 33, 34
We, however, found no LOH in any of the histologically normal squamous
mucosas used as control and we attribute this to the relatively small
contribution of the squamous epithelium relative to the subepithelial
elements in the tissues used. Microdissection of epithelial cells may
have led to the identification of LOH in these histologically
nondysplastic squamous mucosa as reported in at high risk
patients7, 34
studied by our group. Nonetheless, the
finding of LOH in saliva samples lacking malignant cells on cytologic
evaluation, lends further credence to the field cancerization
hypothesis and the increased risk of a second primary cancer developing
in these patients7, 26, 35, 36, 37
. Although none of the
patients in this study manifested evidence of recurrence or secondary
tumors thus far, a longer follow-up period is required to substantiate
this notion. Other studies, however, have shown a high concordance in
matched secretion and tumor specimens, indicating common clonal
derivation16, 17, 20, 23, 24, 38, 39
. In these studies, however,
malignant cells were identified and analyzed in the cellular sources
used.
In our study, although no cytological evidence of malignancy in any of
the saliva samples was identified, cytologic atypia was found in more
than 50% of the specimens. This feature correlated significantly with
LOH at two markers on the short arm of chromosomes 3 and 9. Our
findings, along with those from previous studies of head and neck,
lung, and bladder tumors indicate that combining molecular and
cytologic analyses in secretions may provide additional information for
better identification of high risk
patients5, 7, 8, 9, 20, 39, 40
. Our results also show that
alterations at microsatellite markers in tumors correlated
significantly with aggressive clinicopathologic factors in these
patients. A similar correlation has been reported in other studies,
indicating that alterations in certain chromosomal loci are associated
with the pathobiologic characteristics of these tumors and may be used
for the biological assessment of these tumors.10, 11
Of
particular interest in our study is the finding of a significant
correlation between LOH at certain chromosomal regions in tumor and
smoking and alcohol consumption. Additional investigations of these
regions may lead to identifying the markers or genes that are
associated with carcinogenesis. Previous studies have also reported an
association between LOH in these same chromosomal loci and tumors in
the upper respiratory tract.41, 42
In conclusion, the results of our study indicate that, in patients with
HNSC, saliva is a readily available source of DNA for genetic
analysis.42, 43
Enriching for epithelial cells may increase
the correlation obtained between saliva and tumor specimens.
Alternatively, cells obtained by buccal brushing of multiple sites in
the oral cavity may be used as a noninvasive substitute for molecular
analysis.26, 44
Our results lend molecular evidence for
field cancerization45, 46
and the use of selective genetic
markers in early detection of HNSC in people at high
risk.24, 43, 47
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Acknowledgments
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The authors thank Sue M. Martinez for typing the manuscript.
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Footnotes
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Address reprint requests to Adel K. El-Naggar, M.D., Ph.D., Department of Pathology, The University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Blvd., Box 85, Houston, TX 77030. E-mail: anaggar{at}notes.mdacc.tmc.edu
Supported in part by Oral Cancer Center of Excellence Grant
1P5011960601, the M. D. Anderson Tobacco Settlement Research
Initiatives Program, and The Kenneth D. Muller Professorship (A.E.-N.).
Accepted for publication June 25, 2001.
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