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Light Chain Polymerase Chain Reaction Method



From the Department of Pathology,
*
Experimental Pathology Laboratory, University of New Mexico; Tricore Reference Laboratories,
Albuquerque, New Mexico; and the Department of Pathology,
William Beaumont Hospital, Troy, Michigan
To augment the detection of clonality in B-cell malignancies, we designed a consensus primer
light chain gene (Ig
) polymerase chain reaction (PCR) assay in combination with a consensus primer immunoglobulin heavy chain gene (IgH) PCR assay. Its efficacy was then evaluated in a series of 86 paraffin tissue samples comprising neoplastic and reactive lymphoproliferations. Analysis after PCR was accomplished by 10% native polyacrylamide gel electrophoresis after heteroduplex pretreatment of PCR products and by a post-PCR chip-based capillary electrophoresis analytic method. Overall, 49 of 68 (72%) of mature B-cell neoplasms yielded discrete Ig
gel bands within the predicted size range with no clonotypic Ig
products observed among reactive lymphoid or T-cell proliferations. The application of Ig
PCR improved overall sensitivity from 81% with IgH PCR alone to 90% with combined Ig
/IgH PCR, with this effect being most notable in germinal center-related lymphomas. Sequencing of positive Ig
rearrangements revealed that most rearrangements involved members of the V
1 (40%) and V
2 (34%) gene families along with J
1 (26%), J
2 (23%), and J
4 (51%) gene segments. Involvement of V
pseudogenes was identified in 24% of cases with V
-KDE rearrangements. Our results demonstrate the efficacy of Ig
PCR in improving the detection rate of clonality in B-cell neoplasms and further introduce a novel post-PCR chip-based capillary electrophoresis analytic method for rapid PCR fragment size evaluation.
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M. A Catherwood, D. Gonzalez, C. Patton, E. Dobbin, L. Venkatraman, and H D. Alexander Improved clonality assessment in germinal centre/post-germinal centre non-Hodgkin's lymphomas with high rates of somatic hypermutation J. Clin. Pathol., May 1, 2007; 60(5): 524 - 528. [Abstract] [Full Text] [PDF] |
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